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acedb.vim
" Vim syntax file " Language: AceDB model files " Maintainer: Stewart Morris (Stewart.Morris@ed.ac.uk) " Last change: Thu Apr 26 10:38:01 BST 2001 " URL: http://www.ed.ac.uk/~swmorris/vim/acedb.vim " Syntax file to handle all $ACEDB/wspec/*.wrm files, primarily models.wrm " AceDB software is available from http://www.acedb.org " quit when a syntax file was already loaded if exists("b:current_syntax") finish endif syn keyword acedbXref XREF syn keyword acedbModifier UNIQUE REPEAT syn case ignore syn keyword acedbModifier Constraints syn keyword acedbType DateType Int Text Float " Magic tags from: http://genome.cornell.edu/acedocs/magic/summary.html syn keyword acedbMagic pick_me_to_call No_cache Non_graphic Title syn keyword acedbMagic Flipped Centre Extent View Default_view syn keyword acedbMagic From_map Minimal_view Main_Marker Map Includes syn keyword acedbMagic Mapping_data More_data Position Ends Left Right syn keyword acedbMagic Multi_Position Multi_Ends With Error Relative syn keyword acedbMagic Min Anchor Gmap Grid_map Grid Submenus Cambridge syn keyword acedbMagic No_buttons Columns Colour Surround_colour Tag syn keyword acedbMagic Scale_unit Cursor Cursor_on Cursor_unit syn keyword acedbMagic Locator Magnification Projection_lines_on syn keyword acedbMagic Marker_points Marker_intervals Contigs syn keyword acedbMagic Physical_genes Two_point Multi_point Likelihood syn keyword acedbMagic Point_query Point_yellow Point_width syn keyword acedbMagic Point_pne Point_pe Point_nne Point_ne syn keyword acedbMagic Derived_tags DT_query DT_width DT_no_duplicates syn keyword acedbMagic RH_data RH_query RH_spacing RH_show_all syn keyword acedbMagic Names_on Width Symbol Colours Pne Pe Nne pMap syn keyword acedbMagic Sequence Gridded FingerPrint In_Situ Cosmid_grid syn keyword acedbMagic Layout Lines_at Space_at No_stagger A1_labelling syn keyword acedbMagic DNA Structure From Source Source_Exons syn keyword acedbMagic Coding CDS Transcript Assembly_tags Allele syn keyword acedbMagic Display Colour Frame_sensitive Strand_sensitive syn keyword acedbMagic Score_bounds Percent Bumpable Width Symbol syn keyword acedbMagic Blixem_N Address E_mail Paper Reference Title syn keyword acedbMagic Point_1 Point_2 Calculation Full One_recombinant syn keyword acedbMagic Tested Selected_trans Backcross Back_one syn keyword acedbMagic Dom_semi Dom_let Direct Complex_mixed Calc syn keyword acedbMagic Calc_upper_conf Item_1 Item_2 Results A_non_B syn keyword acedbMagic Score Score_by_offset Score_by_width syn keyword acedbMagic Right_priority Blastn Blixem Blixem_X syn keyword acedbMagic Journal Year Volume Page Author syn keyword acedbMagic Selected One_all Recs_all One_let syn keyword acedbMagic Sex_full Sex_one Sex_cis Dom_one Dom_selected syn keyword acedbMagic Calc_distance Calc_lower_conf Canon_for_cosmid syn keyword acedbMagic Reversed_physical Points Positive Negative syn keyword acedbMagic Point_error_scale Point_segregate_ordered syn keyword acedbMagic Point_symbol Interval_JTM Interval_RD syn keyword acedbMagic EMBL_feature Homol Feature syn keyword acedbMagic DT_tag Spacer Spacer_colour Spacer_width syn keyword acedbMagic RH_positive RH_negative RH_contradictory Query syn keyword acedbMagic Clone Y_remark PCR_remark Hybridizes_to syn keyword acedbMagic Row Virtual_row Mixed In_pool Subpool B_non_A syn keyword acedbMagic Interval_SRK Point_show_marginal Subsequence syn keyword acedbMagic Visible Properties Transposon syn match acedbClass "^?\w\+\|^#\w\+" syn match acedbComment "//.*" syn region acedbComment start="/\*" end="\*/" syn match acedbComment "^#\W.*" syn match acedbHelp "^\*\*\w\+$" syn match acedbTag "[^^]?\w\+\|[^^]#\w\+" syn match acedbBlock "//#.\+#$" syn match acedbOption "^_[DVH]\S\+" syn match acedbFlag "\s\+-\h\+" syn match acedbSubclass "^Class" syn match acedbSubtag "^Visible\|^Is_a_subclass_of\|^Filter\|^Hidden" syn match acedbNumber "\<\d\+\>" syn match acedbNumber "\<\d\+\.\d\+\>" syn match acedbHyb "\<Positive_\w\+\>\|\<Negative\w\+\>" syn region acedbString start=/"/ end=/"/ skip=/\\"/ oneline " Rest of syntax highlighting rules start here " Define the default highlighting. " Only when an item doesn't have highlighting yet hi def link acedbMagic Special hi def link acedbHyb Special hi def link acedbType Type hi def link acedbOption Type hi def link acedbSubclass Type hi def link acedbSubtag Include hi def link acedbFlag Include hi def link acedbTag Include hi def link acedbClass Todo hi def link acedbHelp Todo hi def link acedbXref Identifier hi def link acedbModifier Label hi def link acedbComment Comment hi def link acedbBlock ModeMsg hi def link acedbNumber Number hi def link acedbString String let b:current_syntax = "acedb" " The structure of the model.wrm file is sensitive to mixed tab and space " indentation and assumes tabs are 8 so... se ts=8
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